BtaEX6009762 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001887 | STAM2
Description
Bos taurus signal transducing adaptor molecule (SH3 domain and ITAM motif) 2 (STAM2), mRNA. [Source:RefSeq mRNA;Acc:NM_001076106]
Coordinates
chr2:44157749-44164431:+
Coord C1 exon
chr2:44157749-44157803
Coord A exon
chr2:44161420-44161573
Coord C2 exon
chr2:44164262-44164431
Length
154 bp
Sequences
Splice sites
3' ss Seq
GAGCTTTTCTTCTATATCAGGAA
3' ss Score
7.14
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ATATCTGCCAACAGATGGGTCCAATGATAGATGAAAAACTTGAAGAGATTGATAG
Seq A exon
GAAGCATTCAGAATTGTCTGAATTGAATGTAAAAGTCTTAGAAGCTCTGGAACTTTATAATAAGTTGATGAATGAAGCGCCAGTATATGCAGTCTATTCAAAGATCCACCATCCAGCACATTACCCAACTTCATCAGCTGGAGTTCCAATTCAG
Seq C2 exon
ACATACCCAGTTCAACCACATGGTGGAAACTATATGGGTCAAAGTATTCACCAAGTCACTGTTGCCCAAAGCTACAGCCTAGGACCAGATCAGATTGGTCCACTGAGATCTCTGCCTCCAACTGTGAATTCCTCAGTGACAACACAGCCTGCTCAAACTCCGTACTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001887-'5-9,'5-7,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.368 A=0.192 C2=0.684
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACAGATGGGTCCAATGAT
R:
CTTAAGTACGGAGTTTGAGCAGGC
Band lengths:
218-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]