GgaEX0018918 @ galGal3
Exon Skipping
Gene
ENSGALG00000012513 | STAM2
Description
NA
Coordinates
chr7:37033393-37035917:-
Coord C1 exon
chr7:37035863-37035917
Coord A exon
chr7:37035076-37035229
Coord C2 exon
chr7:37033393-37033562
Length
154 bp
Sequences
Splice sites
3' ss Seq
TTGTATTTATTTTGAAACAGAAA
3' ss Score
6.68
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
TTATTTGTCAGCAGATGGGTCCAATGATAGATGAAAAACTGGAAGAAATAGATAG
Seq A exon
AAAACATTCCGAATTATCTGAACTGAATGTGAAAGTTCTAGAAGCTCTGGAGCTCTATAACAAACTGATGAATGAAACACCGATGTATTCAGCCTACTCCAAACTCCATCATCCTGCACAATACCCACCTACATCTTCTGGTGTTTCAGTGCAG
Seq C2 exon
TCGTATCCTGTACAGCCACCTAGTGGGAACTACATGATCCAAGGTGTTCACCAAGTCACCGTTTCCCAAGGTTACGGCCTAGGACCTGATCAGATGGGGCAGCTCAGGTCTCTGCCTCAAAATATCAATTCTTCTGGAGCAACTCAGCCTGTACAAACTGCTTATTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012513-'17-16,'17-15,18-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.316 A=0.404 C2=0.593
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATTTGTCAGCAGATGGGTCCA
R:
AAGCAGTTTGTACAGGCTGAGT
Band lengths:
218-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]