RnoEX6016879 @ rn6
Exon Skipping
Gene
ENSRNOG00000027447 | Stam2
Description
signal transducing adaptor molecule 2 [Source:RGD Symbol;Acc:1311497]
Coordinates
chr3:38233588-38240013:-
Coord C1 exon
chr3:38239959-38240013
Coord A exon
chr3:38236703-38236853
Coord C2 exon
chr3:38233588-38233754
Length
151 bp
Sequences
Splice sites
3' ss Seq
AAATACTTGTCTTGCATCAGGAG
3' ss Score
4.19
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ATATTTGCCAACAGATGGGTCCAATGATAGATGAAAAACTTGAAGAAATTGATAG
Seq A exon
GAGGCACTCAGAGCTGTCGGAGCTGAACGTAAAGGTGCTGGAGGCCCTGGAGCTGTACAACAAATTGGTCAATGAAGCGCCCATGTACTCAGTCTATTCGAAGCTCCACCCGGCTCCTTACTCAGCCACAGCAGCTGGGGTTCCAGTGCAG
Seq C2 exon
ACATACCCAGTCCAGTCGCATGGTGGGAACTACCTGGGTCATGGCATTCACCAAGTACCTGTTGCCCAGAGCTATAACCTAGGACCTGATCCTATGGGCTCATCGAGGTCTCTGCCTCCAAATATGAACTCAGTAACAGCACACACCATCCAACCTCCATATTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027447-'20-17,'20-16,21-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.579 A=0.137 C2=0.661
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACAGATGGGTCCAATGAT
R:
ATATGGAGGTTGGATGGTGTGTG
Band lengths:
210-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]