GgaEX0018918 @ galGal4
Exon Skipping
Gene
ENSGALG00000012513 | STAM2
Description
signal transducing adapter molecule 2 [Source:RefSeq peptide;Acc:NP_001012940]
Coordinates
chr7:34905961-34908450:-
Coord C1 exon
chr7:34908396-34908450
Coord A exon
chr7:34907609-34907762
Coord C2 exon
chr7:34905961-34906095
Length
154 bp
Sequences
Splice sites
3' ss Seq
TTGTATTTATTTTGAAACAGAAA
3' ss Score
6.68
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
TTATTTGTCAGCAGATGGGTCCAATGATAGATGAAAAACTGGAAGAAATAGATAG
Seq A exon
AAAACATTCCGAATTATCTGAACTGAATGTGAAAGTTCTAGAAGCTCTGGAGCTCTATAACAAACTGATGAATGAAACACCGATGTATTCAGCCTACTCCAAACTCCATCATCCTGCACAATACCCACCTACATCTTCTGGTGTTTCAGTGCAG
Seq C2 exon
TCGTATCCTGTACAGCCACCTAGTGGGAACTACATGATCCAAGGTGTTCACCAAGTCACCGTTTCCCAAGGTTACGGCCTAGGACCTGATCAGATGGGGCAGCTCAGGTCTCTGCCTCAAAATATCAATTCTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012513_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.316 A=0.404 C2=0.511
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTTGTCAGCAGATGGGTCCA
R:
AGAATTGATATTTTGAGGCAGAGACC
Band lengths:
186-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]