MmuEX0045262 @ mm9
Exon Skipping
Gene
ENSMUSG00000055371 | Stam2
Description
signal transducing adaptor molecule (SH3 domain and ITAM motif) 2 [Source:MGI Symbol;Acc:MGI:1929100]
Coordinates
chr2:52559039-52565487:-
Coord C1 exon
chr2:52565433-52565487
Coord A exon
chr2:52562136-52562286
Coord C2 exon
chr2:52559039-52559205
Length
151 bp
Sequences
Splice sites
3' ss Seq
ATCCTTGTCTTGTCTATCAGGAA
3' ss Score
9.29
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ATGTTTGCCAACAGATGGGTCCGATGATAGATGAAAAACTTGAAGAGATTGATAG
Seq A exon
GAAGCATTCAGAACTGTCTGAGTTGAACGTAAAGGTGCTGGAAGCCCTGGACCTGTACAATAAGTTGGTGAATGAAGCGCCTGTGTACTCGGTCTATTCAAAGCTGCATCCCGCACATTACCCACCCGCAGCAGCTGGGGTTCCAGTGCAG
Seq C2 exon
ACATATCCAGTCCAGTCGCATGGTGGAAACTACCTGGGCCACGGCATTCACCAAGTATCTGTTGCCCAGAACTATAACCTAGGACCTGATCCTATGGGCTCGCTGAGATCTCTGCCTCCAAATATGAACTCGGTAACAGCACACACCGTCCAACCTCCATACTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055371-'19-16,'19-14,20-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.579 A=0.167 C2=0.567
Domain overlap (PFAM):
C1:
PF031279=GAT=FE(24.7=100)
A:
PF031279=GAT=PD(41.1=58.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACAGATGGGTCCGATGAT
R:
AGTATGGAGGTTGGACGGTGT
Band lengths:
211-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: