DreEX0075735 @ danRer10
Exon Skipping
Gene
ENSDARG00000005318 | stam2
Description
signal transducing adaptor molecule (SH3 domain and ITAM motif) 2 [Source:ZFIN;Acc:ZDB-GENE-041114-64]
Coordinates
chr9:38251482-38252019:+
Coord C1 exon
chr9:38251482-38251536
Coord A exon
chr9:38251619-38251775
Coord C2 exon
chr9:38251877-38252019
Length
157 bp
Sequences
Splice sites
3' ss Seq
ATCTTCTGTAACTCCTGCAGGAA
3' ss Score
9.55
5' ss Seq
CAGGTTGGC
5' ss Score
5.52
Exon sequences
Seq C1 exon
ATGCTTGTGAAAAGATGAACCCATTGATCGACGAGAAACTACAAGAGATTGACAG
Seq A exon
GAAGCACTCCGAGTTGTCCGAACTGAATGTGAAGGTCCTGGAAGCTCTTGAGCTGTATAACCAGTTAATGAATGAGGCTCCACTGTACAATGCATACTCCAAAATGCAGTCGCTCCAAGGCACTTACCCAGCAGCCCCTCCTCATCTCTCTATGCAG
Seq C2 exon
GGCTATCAGCCATCAGGAGCCTACATGTCTGCTGGTGTCCCACAGGGCTATAGTCTCACAGACCAAGCTGGACCACTCTGCTCCATGCCTCCTTCAATCAATTCAGTGGCTCCCAGTCAGCCTGCACAACCATCTTACATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005318-'11-12,'11-11,12-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.737 A=0.226 C2=0.667
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTTGTGAAAAGATGAACCCA
R:
TGTAAGATGGTTGTGCAGGCT
Band lengths:
194-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]