BtaEX6009935 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012615 | ZEB2
Description
zinc finger E-box binding homeobox 2 [Source:HGNC Symbol;Acc:HGNC:14881]
Coordinates
chr2:52392028-52397851:+
Coord C1 exon
chr2:52392028-52392242
Coord A exon
chr2:52394836-52394944
Coord C2 exon
chr2:52395882-52397851
Length
109 bp
Sequences
Splice sites
3' ss Seq
CAGTCTTTCTCCTTTTATAGCAC
3' ss Score
8.76
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
ACCTGCCACCTGGAACTCCAGATGCTTTTGCCCAACTGCTGACCTGCCCCTACTGCGACCGGGGCTACAAGCGCTTGACATCACTGAAGGAGCACATCAAGTACCGCCACGAGAAGAATGAAGAGAACTTTTCCTGCCCTCTGTGTAGCTACACGTTTGCCTACCGCACCCAGCTCGAGCGGCATATGGTGACGCACAAGCCAGGGACAGATCAG
Seq A exon
CACCAAATGCTGACCCAAGGAGCAGGTAATCGCAAGTTCAAATGCACAGAGTGTGGCAAGGCCTTCAAATATAAACACCATCTGAAGGAACACCTGCGAATCCACAGTG
Seq C2 exon
GTGAAAAACCGTACGAGTGCCCCAACTGCAAGAAACGTTTCTCCCATTCTGGTTCCTACAGTTCACACATCAGCAGCAAGAAATGTATTGGCTTAATCTCTGTAAATGGCCGAATGAGAAACAATATCAAGACAGGTTCTTCTCCTAATTCTGTTTCTTCTTCTCCTACTAATTCAGCCATTACCCAGTTAAGAAACAAATTGGAGAATGGAAAACCACTTAGTATGTCTGAACAGACAGGCTTACTTAAAATTAAAACAGAACCACTAGACTTCAATGACTATAAAGTTCTTATGGCCACACATGGGTTTAGTGGAACTAGTCCTTTTATGAATGGTGCACTTGGAGCCACCAGCCCTTTAGGAGTTCATCCGTCTGCTCAGAGTCCAATGCAGCACTTAGGTGTAGGGATGGAAGCCCCTTTACTTGGATTTCCCACAATGAATAGTAATTTAAGCGAGGTACAAAAGGTTCTACAGATTGTGGACAACACAGTTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012615-'12-10,'12-9,13-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.189 C2=0.457
Domain overlap (PFAM):
C1:
PF056057=zf-Di19=WD(100=84.7)
A:
PF134651=zf-H2C2_2=PU(38.5=27.0)
C2:
PF134651=zf-H2C2_2=PD(57.7=2.3),PF0004624=Homeobox=WD(100=7.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCTTTTGCCCAACTGCTG
R:
GGAACCAGAATGGGAGAAACGT
Band lengths:
251-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]