DreEX6019746 @ danRer10
Exon Skipping
Gene
ENSDARG00000078416 | zeb2b
Description
zinc finger E-box binding homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-080717-1]
Coordinates
chr6:1164693-1174285:-
Coord C1 exon
chr6:1174071-1174285
Coord A exon
chr6:1166895-1167003
Coord C2 exon
chr6:1164693-1166680
Length
109 bp
Sequences
Splice sites
3' ss Seq
GAATATTTTCCCATCCACAGCAT
3' ss Score
7.25
5' ss Seq
GTGGTACGT
5' ss Score
8.61
Exon sequences
Seq C1 exon
ACCTGCCACCTGGAACTCCAGATGCTTTCGCCCAACTGTTGACCTGCCCCTACTGCGACCGGGGCTACAAGCGCTTGACTTCCCTGAAGGAGCACATCAAGTACCGGCACGAGAAAAACGAGGAGAACTTCGCCTGCCCTCTGTGCAGCTACACGTTTGCTTACCGCACTCAGCTGGAGAGACATATGGCCACACACAAGCCAGGCCGAGATCAG
Seq A exon
CATCAGATTCTCAACCAGGGTTCTGGGAACCGCAAGTTCAAATGCACTGAATGTGGCAAGGCCTTCAAATACAAACACCATCTAAAGGAGCACCTGCGGATACACAGTG
Seq C2 exon
GTGAGAAGCCATACGAATGTCCAAACTGTAAGAAGAGGTTTTCACACTCCGGGTCCTACAGTTCACACATTAGTAGTAAGAAATGCATTGGATTGATTGCAATCAACGGCAGGGTTAGGAACAACCTAAAGACTGGTTCATCCCCAACTTCTGCTTCTTCCTCTCCTACGAACAATGCCATTTCTCAGCTACGACACAAACTGGAGAACGGCAAACCTCTCGGATTGCAAGACCAGTCCAACCACCTCAACATCAAATCTGAACCACTGGACTTCAACGACTATAAGCTGATGATGGCCTCTCATGGCTACGCTACGGGAAGCCCTTTTCTCAACGGTGGAGTGAGGGGAGGCAGTCCGTTGGGCATTCATAACTCCCAGAGTCCCCTACAGCACCTGGGAATGGGTATTGAGGGGCAAATGTTGGGATACCCATCACTGGGAAACAATCTGAGTGAGGTACAGAAGGTGCTTCAGATTGTGGATAACACAGTTTGTCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078416-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.236 A=0.216 C2=0.468
Domain overlap (PFAM):
C1:
PF056057=zf-Di19=WD(100=79.2)
A:
PF134651=zf-H2C2_2=PU(38.5=27.0)
C2:
PF134651=zf-H2C2_2=PD(57.7=2.3),PF0004624=Homeobox=WD(100=7.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTCGCCCAACTGTTGACCT
R:
GACCCGGAGTGTGAAAACCTC
Band lengths:
246-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]