MmuEX6101109 @ mm9
Exon Skipping
Gene
ENSMUSG00000026872 | Zeb2
Description
zinc finger E-box binding homeobox 2 [Source:MGI Symbol;Acc:MGI:1344407]
Coordinates
chr2:44851546-44857334:-
Coord C1 exon
chr2:44857120-44857334
Coord A exon
chr2:44854404-44854512
Coord C2 exon
chr2:44851546-44853515
Length
109 bp
Sequences
Splice sites
3' ss Seq
CCATTTTTCTCCTTTTACAGCAC
3' ss Score
11.11
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
ACCTGCCACCTGGAACTCCAGATGCTTTTGCCCAACTGCTGACCTGCCCCTACTGCGACCGCGGCTACAAGCGCTTGACATCGCTGAAGGAGCACATCAAGTACCGCCACGAGAAGAATGAAGAGAACTTTTCCTGCCCTCTTTGTAGCTACACGTTCGCCTACCGCACCCAGCTCGAGAGGCATATGGTGACGCACAAGCCAGGGACAGATCAG
Seq A exon
CACCAAATGCTAACCCAAGGAGCAGGTAACCGCAAGTTCAAGTGCACGGAGTGTGGCAAGGCCTTCAAGTACAAGCACCACCTGAAAGAACACCTGAGAATTCACAGTG
Seq C2 exon
GTGAAAAACCTTACGAATGCCCAAACTGCAAGAAACGCTTCTCTCATTCTGGGTCCTACAGTTCACATATCAGCAGCAAGAAATGTATTGGTTTAATATCAGTAAATGGCCGAATGAGAAACAATATCAAGACGGGTTCTTCCCCTAATTCTGTTTCTTCTTCTCCTACTAACTCAGCCATTACTCAGTTAAGGAACAAGTTGGAAAATGGAAAACCACTTAGCATGTCTGAGCAGACAGGCTTACTTAAGATTAAAACAGAACCACTAGACTTCAATGACTATAAAGTTCTTATGGCAACACATGGGTTTAGTGGCAGCAGTCCCTTTATGAACGGTGGGCTTGGAGCCACCAGCCCTTTAGGTGTACACCCATCTGCTCAGAGTCCAATGCAGCACTTAGGTGTAGGGATGGAAGCCCCTTTACTTGGATTTCCCACTATGAATAGTAACTTGAGTGAGGTACAAAAGGTTCTACAGATTGTGGACAATACGGTTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026872-'18-22,'18-21,19-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.189 C2=0.483
Domain overlap (PFAM):
C1:
PF056057=zf-Di19=PU(95.2=83.3)
A:
PF056057=zf-Di19=PD(1.6=2.7),PF0009621=zf-C2H2=WD(100=62.2)
C2:
PF134651=zf-H2C2_2=PD(57.7=2.3),PF0004624=Homeobox=WD(100=7.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCTTTTGCCCAACTGCTG
R:
GGACCCAGAATGAGAGAAGCG
Band lengths:
251-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: