RnoEX0100921 @ rn6
Exon Skipping
Gene
ENSRNOG00000004677 | Zeb2
Description
zinc finger E-box binding homeobox 2 [Source:RGD Symbol;Acc:1307272]
Coordinates
chr3:29870024-29874051:-
Coord C1 exon
chr3:29873951-29874051
Coord A exon
chr3:29872876-29872984
Coord C2 exon
chr3:29870024-29871993
Length
109 bp
Sequences
Splice sites
3' ss Seq
CCATTTTTCTCCTTTCACAGCAC
3' ss Score
9.78
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
ATCTGTCTCACTAGGAATGTGGGAAGATTCAGCACACCCTAGCAGTTGTCACACCGTTCCTGTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Seq A exon
CACCAAATGCTAACCCAAGGAGCAGGTAACCGCAAGTTCAAGTGCACAGAGTGTGGCAAGGCCTTCAAGTACAAGCACCACCTGAAAGAACACCTGAGAATTCACAGTG
Seq C2 exon
GTGAAAAACCTTACGAATGCCCCAACTGCAAGAAACGCTTCTCTCATTCTGGTTCCTACAGTTCACATATCAGCAGCAAGAAATGTATTGGTTTAATCTCAGTAAATGGCCGAATGAGAAACAATATCAAGACGGGTTCTTCCCCTAATTCTGTTTCTTCTTCTCCTACTAACTCAGCCATTACTCAACTAAGGAACAAGTTGGAAAATGGAAAACCACTTAGCATGTCTGAGCAGACGGGCTTACTTAAGATTAAAACAGAACCACTAGACTTCAATGACTATAAAGTTCTTATGGCAACACATGGGTTTAGTGGCACTAGTCCCTTTATGAACGGTGGGCTTGGAGCCACCAGCCCTTTAGGTGTGCACCCATCTGCTCAGAGTCCAATGCAGCACTTAGGTGTAGGGTTAGAAGCCCCTTTACTTGGATTTCCCACTATGAATAGTAATCTGAGTGAGGTACAAAAGGTTCTACAGATTGTGGATAATACGGTTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004677-'44-27,'44-26,45-27
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.189 C2=0.443
Domain overlap (PFAM):
C1:
NA
A:
PF134651=zf-H2C2_2=PU(38.5=27.0)
C2:
PF134651=zf-H2C2_2=PD(57.7=2.3),PF0004624=Homeobox=WD(100=7.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCTAGCAGTTGTCACACC
R:
TGGCTGAGTTAGTAGGAGAAGA
Band lengths:
247-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]