GgaEX6043204 @ galGal4
Exon Skipping
Gene
ENSGALG00000012440 | ZEB2
Description
zinc finger E-box binding homeobox 2 [Source:HGNC Symbol;Acc:HGNC:14881]
Coordinates
chr7:32823920-32829566:-
Coord C1 exon
chr7:32829352-32829566
Coord A exon
chr7:32826778-32826886
Coord C2 exon
chr7:32823920-32825889
Length
109 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTTTTTTTCTCCCAGCAC
3' ss Score
9.22
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
ACCTGCCACCTGGAACTCCAGATGCCTTCGCCCAACTGCTGACCTGCCCCTACTGCGACCGGGGCTACAAGCGCCTGACGTCCCTCAAGGAGCACATCAAGTACCGCCATGAGAAGAATGAGGAGAACTTCTCGTGCCCTCTCTGTAGCTACACGTTTGCCTACCGCACCCAGCTCGAGCGGCATATGGTGACACACAAGCCAGGGACAGATCAG
Seq A exon
CACCAAATGCTGACCCAAGGAGCAGGCAATCGCAAGTTCAAATGCACTGAGTGTGGCAAGGCCTTCAAATATAAACACCATCTGAAGGAACACCTGCGAATTCACAGTG
Seq C2 exon
GTGAAAAACCGTATGAGTGTCCAAACTGCAAGAAACGTTTCTCGCATTCTGGCTCCTACAGTTCGCACATCAGCAGCAAGAAGTGTATCGGTTTAATCTCTGTAAATGGCAGAATGAGAAACAATATCAAGACGGGTTCTTCTCCTAATTCTGTATCTTCCTCTCCTACTAATTCAGCCATTACACAGCTGAGAAACAAGCTGGAGAATGGCAAACCACTTAGTATGTCTGAACAAACAGGCCTACTGAAAATTAAAACAGAACCACTAGATTTCAATGAATATAAGGTTCTTATGGCCTCACATGGGTTTAGTGCAACTAGTCCTTTTATGAATGGTGGACTTGGAGCAACCAGCCCCTTAGGAGTTCACACTTCTGCTCAAAGTCCGATGCAGCACTTAGGTGTAGGGATGGAAGCACCATTACTTGGCTTTCCTGCAGTAGGCAGTAATTTAAGTGAGGTGCAGAAGGTCCTACAGATCGTGGACAACACAGTTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012440-'7-12,'7-11,8-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.264 A=0.189 C2=0.464
Domain overlap (PFAM):
C1:
PF056057=zf-Di19=WD(100=84.7)
A:
PF134651=zf-H2C2_2=PU(38.5=27.0)
C2:
PF134651=zf-H2C2_2=PD(57.7=2.3),PF0004624=Homeobox=WD(100=7.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACACAAGCCAGGGACAGAT
R:
TGGTTTGCCATTCTCCAGCTT
Band lengths:
242-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]