BtaEX6009952 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000032277 | KYNU
Description
kynureninase [Source:HGNC Symbol;Acc:HGNC:6469]
Coordinates
chr2:53915975-53942104:-
Coord C1 exon
chr2:53941984-53942104
Coord A exon
chr2:53929096-53929178
Coord C2 exon
chr2:53915975-53916036
Length
83 bp
Sequences
Splice sites
3' ss Seq
ATATCCCTTTTCAATTTCAGGGG
3' ss Score
10.28
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
TTGATTTATCTTTAGTGAATAAGGATGAAGAAGCTATCTATTTCTCGGGAAATTCTCTTGGCCTTCAACCAAAAATGGTTAAAACATACCTGGAAGAGGAACTAGATAAATGGGCCAAAAT
Seq A exon
GGGAGCCTATGGTCACAGTGTAGGGAAACGTCCTTGGATTATAGGAGATGAGACTATTTCAGGACTTATGGCTGACATTGTGG
Seq C2 exon
GAGCCAATGAGAAAGAAATAGCCCTAATGAATGGTTTGACTGTTAATTTACATCTTCTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032277-'3-6,'3-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0026614=Aminotran_5=PU(8.4=68.3)
A:
PF0026614=Aminotran_5=FE(8.4=100)
C2:
PF0026614=Aminotran_5=FE(6.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTTAGTGAATAAGGATGAAGAAGC
R:
TTAACAGTCAAACCATTCATTAGGGC
Band lengths:
159-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]