DreEX6019727 @ danRer10
Exon Skipping
Gene
ENSDARG00000099546 | kynu
Description
kynureninase [Source:ZFIN;Acc:ZDB-GENE-120215-204]
Coordinates
chr6:590705-591972:+
Coord C1 exon
chr6:590705-590825
Coord A exon
chr6:591461-591543
Coord C2 exon
chr6:591911-591972
Length
83 bp
Sequences
Splice sites
3' ss Seq
CCTCCTCTTGTTGTTTGCAGAGG
3' ss Score
10.32
5' ss Seq
TGGGTAATT
5' ss Score
6.19
Exon sequences
Seq C1 exon
TGGATCTCTCTCTTGTGGACAGCTCAGAAGACTGTATTTATTTCGCTGGGAATTCACTGGGCCTTCAGCCCAAAAACACCAAAAAATACATTGATGAAGAACTGGAGAAATGGGCCAAAAC
Seq A exon
AGGCGTTCATGGCCACACGGAGGGGTCGCGACCTTGGGCCTGGGCTGAGGAAACCCTGGAGGAGATGATGGCCAAGATTGTGG
Seq C2 exon
GGGCTAAGACTGAAGAAGTGGCTCTGATGAATGGACTGACCGTCAATCTGCACCTTCTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099546-'2-2,'2-1,4-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.034 C2=0.000
Domain overlap (PFAM):
C1:
PF0026614=Aminotran_5=PU(8.5=68.3)
A:
PF0026614=Aminotran_5=FE(8.5=100)
C2:
PF0026614=Aminotran_5=FE(6.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGACAGCTCAGAAGACTGT
R:
CAGAAGGTGCAGATTGACGGT
Band lengths:
167-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]