MmuEX6101093 @ mm10
Exon Skipping
Gene
ENSMUSG00000026866 | Kynu
Description
kynureninase (L-kynurenine hydrolase) [Source:MGI Symbol;Acc:MGI:1918039]
Coordinates
chr2:43581346-43599642:+
Coord C1 exon
chr2:43581346-43581466
Coord A exon
chr2:43589389-43589471
Coord C2 exon
chr2:43599581-43599642
Length
83 bp
Sequences
Splice sites
3' ss Seq
GTTTCTCTTTTCATCTTCAGGGG
3' ss Score
10.83
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
TTGATCTATCTTTAGTGAGTGAGGATGATGATGCCATCTATTTCCTGGGAAATTCCCTTGGCCTTCAACCGAAAATGGTTAGGACATACCTGGAGGAAGAACTAGATAAGTGGGCCAAGAT
Seq A exon
GGGAGCCTATGGCCATGATGTAGGCAAACGCCCTTGGATTGTAGGGGATGAGAGTATTGTAAGCCTTATGAAGGACATTGTAG
Seq C2 exon
GAGCCCATGAGAAAGAAATAGCTCTAATGAATGCTTTGACTATTAATTTACATCTCCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026866-'1-11,'1-5,6-11=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0026614=Aminotran_5=PU(11.8=68.3)
A:
PF0026614=Aminotran_5=FE(11.8=100)
C2:
PF0026614=Aminotran_5=FE(6.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGTGAGGATGATGATGCCA
R:
CAGCAGGAGATGTAAATTAATAGTCA
Band lengths:
169-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types