RnoEX0047952 @ rn6
Exon Skipping
Gene
ENSRNOG00000029993 | Kynu
Description
kynureninase [Source:RGD Symbol;Acc:71061]
Coordinates
chr3:28452153-28469559:+
Coord C1 exon
chr3:28452153-28452273
Coord A exon
chr3:28459673-28459755
Coord C2 exon
chr3:28469498-28469559
Length
83 bp
Sequences
Splice sites
3' ss Seq
ATGTCCCTTTTCAATTGCAGAGG
3' ss Score
10
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
TTGATCTATCTTTAGTGAATGAGGATGATAATGCCATCTATTTCCTGGGAAATTCCCTTGGTCTTCAACCGAAGATGGTTAAAACATACCTGGAGGAAGAGCTAGATAAGTGGGCCAAAAT
Seq A exon
AGGAGCCTATGGCCATGAGGTAGGGAAACGTCCTTGGATTATAGGAGATGAGAGCATTGTAAGCCTTATGAAGGACATTGTAG
Seq C2 exon
GAGCCCATGAGAAAGAAATAGCTCTAATGAATGCTTTGACTGTTAATTTACATCTCCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029993_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0026614=Aminotran_5=PU(8.3=68.3)
A:
PF0026614=Aminotran_5=PU(3.8=37.9)
C2:
PF0026614=Aminotran_5=FE(5.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGAATGAGGATGATAATGCCA
R:
CAGCAGGAGATGTAAATTAACAGTCA
Band lengths:
170-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]