GgaEX1032717 @ galGal3
Exon Skipping
Gene
ENSGALG00000012418 | F1NDY5_CHICK
Description
NA
Coordinates
chr7:34271076-34282486:+
Coord C1 exon
chr7:34271076-34271196
Coord A exon
chr7:34277027-34277109
Coord C2 exon
chr7:34282425-34282486
Length
83 bp
Sequences
Splice sites
3' ss Seq
TTCCCTCTCTTTCCTTGCAGAGG
3' ss Score
13.22
5' ss Seq
TGGGTAGGT
5' ss Score
6.86
Exon sequences
Seq C1 exon
CTGACCTGACCCTGGTGAATGGAGAGGAGAGCTGCATATACTTTGTTGGGAATTCTCTTGGACTCCAGCCAAAAAAAGTTAAAACTTACCTGGACGAAGAACTGGACAAGTGGGCTCGAAC
Seq A exon
AGGTGTTCATGGCCATTTCAACGGGCAGCGTCCATGGGCTCAGGCGGATGAATGCATTGTGGACTTGATGGCTGAACTGGTGG
Seq C2 exon
GTGCTCAAAGACATGAGGTAGCCTTAATGAATGGACTAACTGTTAACTTGCACCTTCTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012418-'3-3,'3-1,5-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0026614=Aminotran_5=PU(15.6=68.3)
A:
PF0026614=Aminotran_5=FE(15.6=100)
C2:
PF0026614=Aminotran_5=FE(11.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTGGTGAATGGAGAGGAG
R:
AGGTGCAAGTTAACAGTTAGTCCA
Band lengths:
168-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]