BtaEX6011358 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008300 | FN1
Description
Bos taurus fibronectin 1 (FN1), mRNA. [Source:RefSeq mRNA;Acc:NM_001163778]
Coordinates
chr2:103887850-103892436:-
Coord C1 exon
chr2:103891970-103892436
Coord A exon
chr2:103890735-103890873
Coord C2 exon
chr2:103887850-103888014
Length
139 bp
Sequences
Splice sites
3' ss Seq
GGATGTGCTAATCATTGCAGTTC
3' ss Score
4.27
5' ss Seq
CTGGTATGT
5' ss Score
8.14
Exon sequences
Seq C1 exon
ATGAGCTCCCCCAGCTGGTAACCCTTCCACACCCCAATCTTCATGGACCAGAGATCTTGGATGTTCCCTCCACAGTTCAAAAGACCCCTTTCATCACCAACCCTGGGTATGACACTGGAAACGGTATTCAGCTTCCCGGCACTTCTGGTCAGCAGCCCAGTCTTGGGCAACAAATGATCTTTGAGGAGCATGGTTTTAGGCGAACCACACCGCCCACCACGGCCACCCCCGTAAGGCATAGGCCAAGACCGTATCCGCCGAATGTAAATGAGGAGATCCAAATTGGTCATGTCCCCAGGGGAGACGTAGACCATCATCTCTACCCTCACGTTGTGGGACTCAATCCAAATGCTTCTACAGGCCAAGAAGCTCTCTCTCAGACAACCATCTCATGGACCCCATTCCAGGAAAGCTCTGAGTATATCATTTCATGTCATCCAGTTGGCATTGATGAAGAACCCTTACAG
Seq A exon
TTCCGAGTTCCTGGAACCTCTGCTAGTGCCACCTTGACGGGCCTCACCAGAGGGGCCACCTACAACATCATAGTGGAGGCAGTAAAAGACCAGCAGAGGCAGAAGGTTCGCGAGGAGGTGGTTACCGTGGGCAATTCTG
Seq C2 exon
TTGACCAGGGCCTGAGTCAGCCCACAGATGACTCCTGCTTCGACCCCTACACGGTCTCCCATTATGCCATTGGAGAGGAGTGGGAGCGATTGTCTGATTCTGGCTTTAAACTCTCGTGCCAGTGCTTAGGCTTTGGCAGTGGTCATTTCAGATGCGATTCATCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008300-'48-52,'48-51,49-52=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.797 A=0.298 C2=0.036
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(50.0=23.1)
A:
PF0004116=fn3=PD(47.2=72.3)
C2:
PF0003913=fn1=WD(100=71.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCGTATCCGCCGAATGTA
R:
AGTCATCTGTGGGCTGACTCA
Band lengths:
255-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]