GgaEX1066071 @ galGal3
Exon Skipping
Gene
ENSGALG00000003578 | FN1
Description
NA
Coordinates
chr7:4364938-4367716:-
Coord C1 exon
chr7:4367250-4367716
Coord A exon
chr7:4366567-4366705
Coord C2 exon
chr7:4364938-4365102
Length
139 bp
Sequences
Splice sites
3' ss Seq
GGCATTGCTTGTTCTTGCAGTTC
3' ss Score
7.52
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
ATGATCTGCCCACGTTGATTACTGGACCGCACCCCAACCAGCCCGACATGCTCGACGTACCTTCTGTTGATGAGGGAACCCCTTACCTCACAAACAATAGGTATGACAATGGAAACGGTATCCAACTTCCAGGCACTTCAGGGCACCCACAGACAATAGGACACCAAGGTCAGCAAGTCTTCTTCGAGGAGCATGGCTACAGGAGGCCTGTACCCACGACAGCAACTCCCCTTAGGCCTGGGTCGAGACGGCAGCCACCAAATGTAGATGAAGCAATTGAAATCCCAGGGTACCAAGTGCCAATCATAGTTGTACCTTCATACCCCCACTCCCGTGAGCCCAGACGCAACGACACCACGGGCCAAGAAGCTCTTTCTCAGACAACCATCTCCTGGAGGCCTTTGCTGGAGAGCACTGAGTACATCATCTCATGCCAACCAGTCAGCCAGGATGAAGATACTTTGCAG
Seq A exon
TTCAGGGTTCCTGGCACTTCCTCCAGTGCTACGCTCACTGGCCTCACCAGAGGTGCCACCTACAACATCATAGTAGAAGCCCTGAAGGATCACCGCAGACAAAAGGTGCTGGAGGAGGTGGTCACAGTTGGCAATACTG
Seq C2 exon
TGTCTGAAGGACTAAACCAGCCGGCCGACGACACCTGCTATGATACTTACACTGGCTCCTTCTATTCCATTGGCGAGGAGTGGGAGCGATTATCTGAAACGGGCTTTAAACTCTGGTGCCAGTGCTTAGGCTTTGGCAGTGGTCACTTCAGATGCGATTCCTCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003578-'41-47,'41-45,42-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.795 A=0.128 C2=0.036
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(53.8=26.9)
A:
PF0004116=fn3=PD(43.6=72.3)
C2:
PF0003913=fn1=WD(100=71.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCAGCCACCAAATGTAGAT
R:
CCGGCTGGTTTAGTCCTTCAG
Band lengths:
243-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]