GgaEX1066071 @ galGal4
Exon Skipping
Gene
ENSGALG00000003578 | fn1
Description
fibronectin precursor [Source:RefSeq peptide;Acc:NP_001185641]
Coordinates
chr7:4336533-4339076:-
Coord C1 exon
chr7:4338845-4339076
Coord A exon
chr7:4338162-4338300
Coord C2 exon
chr7:4336533-4336697
Length
139 bp
Sequences
Splice sites
3' ss Seq
GGCATTGCTTGTTCTTGCAGTTC
3' ss Score
7.52
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GCCTGGGTCGAGACGGCAGCCACCAAATGTAGATGAAGCAATTGAAATCCCAGGGTACCAAGTGCCAATCATAGTTGTACCTTCATACCCCCACTCCCGTGAGCCCAGACGCAACGACACCACGGGCCAAGAAGCTCTTTCTCAGACAACCATCTCCTGGAGGCCTTTGCTGGAGAGCACTGAGTACATCATCTCATGCCAACCAGTCAGCCAGGATGAAGATACTTTGCAG
Seq A exon
TTCAGGGTTCCTGGCACTTCCTCCAGTGCTACGCTCACTGGCCTCACCAGAGGTGCCACCTACAACATCATAGTAGAAGCCCTGAAGGATCACCGCAGACAAAAGGTGCTGGAGGAGGTGGTCACAGTTGGCAATACTG
Seq C2 exon
TGTCTGAAGGACTAAACCAGCCGGCCGACGACACCTGCTATGATACTTACACTGGCTCCTTCTATTCCATTGGCGAGGAGTGGGAGCGATTATCTGAAACGGGCTTTAAACTCTGGTGCCAGTGCTTAGGCTTTGGCAGTGGTCACTTCAGATGCGATTCCTCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003578-'59-63,'59-61,60-63
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.664 A=0.138 C2=0.036
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(54.5=53.8)
A:
PF0004116=fn3=PD(42.9=70.2)
C2:
PF0003913=fn1=WD(100=71.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCAGCCACCAAATGTAGAT
R:
CCGGCTGGTTTAGTCCTTCAG
Band lengths:
243-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]