RnoEX0036497 @ rn6
Exon Skipping
Gene
ENSRNOG00000014288 | Fn1
Description
fibronectin 1 [Source:RGD Symbol;Acc:2624]
Coordinates
chr9:78905309-78912778:-
Coord C1 exon
chr9:78912689-78912778
Coord A exon
chr9:78910594-78910732
Coord C2 exon
chr9:78905309-78905434
Length
139 bp
Sequences
Splice sites
3' ss Seq
CTCCTGCTTTGGGTGTGTAGTTC
3' ss Score
4.46
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
Exon sequences
Seq C1 exon
GTCTGGAGCCAGGAACCGAGTACACCATCTATGTCATCGCACTGAAGAACAATCAGAAGAGTGAGCCCCTGATTGGGAGGAAAAAGACAG
Seq A exon
TTCCAAGTTCCTGGAACTTCTACCAGTGCGACTCTGACTGGCCTTACCAGAGGGGTCACCTACAACATCATAGTGGAGGCCCTGCACAACCAGAGGAGGCACAAGGTCCGAGAAGAGGTTGTTACTGTAGGCAACACTG
Seq C2 exon
AATGGTGCCATGACAACGGTGTCAACTACAAGATCGGAGAGAAGTGGGATCGTCAGGGAGAAAATGGCCAGCGGATGAGCTGCACATGTCTCGGGAATGGAAAGGGAGAATTCAAATGCGATCCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014288_MULTIEX1-3/4=C1-C2
Average complexity
C3
Mappability confidence:
75%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.387 A=0.404 C2=0.047
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(27.2=71.0)
A:
PF0004116=fn3=PD(45.8=70.2)
C2:
PF0003913=fn1=WD(100=88.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGCCAGGAACCGAGTA
R:
GGGATCGCATTTGAATTCTCCCT
Band lengths:
213-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]