BtaEX6011359 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008300 | FN1
Description
Bos taurus fibronectin 1 (FN1), mRNA. [Source:RefSeq mRNA;Acc:NM_001163778]
Coordinates
chr2:103885885-103890873:-
Coord C1 exon
chr2:103890735-103890873
Coord A exon
chr2:103887850-103888014
Coord C2 exon
chr2:103885885-103886010
Length
165 bp
Sequences
Splice sites
3' ss Seq
TTCTCTCTTTCTTCCTGTAGTTG
3' ss Score
9.95
5' ss Seq
CTAGTGAGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
TTCCGAGTTCCTGGAACCTCTGCTAGTGCCACCTTGACGGGCCTCACCAGAGGGGCCACCTACAACATCATAGTGGAGGCAGTAAAAGACCAGCAGAGGCAGAAGGTTCGCGAGGAGGTGGTTACCGTGGGCAATTCTG
Seq A exon
TTGACCAGGGCCTGAGTCAGCCCACAGATGACTCCTGCTTCGACCCCTACACGGTCTCCCATTATGCCATTGGAGAGGAGTGGGAGCGATTGTCTGATTCTGGCTTTAAACTCTCGTGCCAGTGCTTAGGCTTTGGCAGTGGTCATTTCAGATGCGATTCATCTA
Seq C2 exon
AATGGTGCCATGACAATGGAGTGAACTACAAGATTGGAGAGAAGTGGGATCGTCAGGGAGAGAATGGCCAGATGATGAGCTGCACGTGTCTTGGAAATGGAAAAGGAGAATTCAAGTGTGATCCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008300-'49-53,'49-52,50-53=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.298 A=0.036 C2=0.047
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(47.2=72.3)
A:
PF0003913=fn1=WD(100=71.4)
C2:
PF0003913=fn1=WD(100=88.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCGAGTTCCTGGAACCTCT
R:
TTTCCATTTCCAAGACACGTGC
Band lengths:
242-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]