GgaEX1066073 @ galGal3
Exon Skipping
Gene
ENSGALG00000003578 | FN1
Description
NA
Coordinates
chr7:4364196-4366705:-
Coord C1 exon
chr7:4366567-4366705
Coord A exon
chr7:4364938-4365102
Coord C2 exon
chr7:4364196-4364321
Length
165 bp
Sequences
Splice sites
3' ss Seq
TTCTTCTCTTTTCGTTCCAGTGT
3' ss Score
10.18
5' ss Seq
CTAGTGAGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
TTCAGGGTTCCTGGCACTTCCTCCAGTGCTACGCTCACTGGCCTCACCAGAGGTGCCACCTACAACATCATAGTAGAAGCCCTGAAGGATCACCGCAGACAAAAGGTGCTGGAGGAGGTGGTCACAGTTGGCAATACTG
Seq A exon
TGTCTGAAGGACTAAACCAGCCGGCCGACGACACCTGCTATGATACTTACACTGGCTCCTTCTATTCCATTGGCGAGGAGTGGGAGCGATTATCTGAAACGGGCTTTAAACTCTGGTGCCAGTGCTTAGGCTTTGGCAGTGGTCACTTCAGATGCGATTCCTCTA
Seq C2 exon
AGTGGTGCCACGATAATGGTGTGAACTACAAGATTGGGGAGAAGTGGGACCGGCAGGGGGAGAATGGCCAGATGATGAGCTGCACCTGCCTCGGGAATGGAAAAGGAGAATTCAAGTGTGAACCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003578-'42-48,'42-47,43-48=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.128 A=0.036 C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(43.6=72.3)
A:
PF0003913=fn1=WD(100=71.4)
C2:
PF0003913=fn1=WD(100=88.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGTTCCTGGCACTTCCTC
R:
CTCCTTTTCCATTCCCGAGGC
Band lengths:
244-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]