RnoEX0036498 @ rn6
Exon Skipping
Gene
ENSRNOG00000014288 | Fn1
Description
fibronectin 1 [Source:RGD Symbol;Acc:2624]
Coordinates
chr9:78905309-78912778:-
Coord C1 exon
chr9:78912689-78912778
Coord A exon
chr9:78907654-78907818
Coord C2 exon
chr9:78905309-78905434
Length
165 bp
Sequences
Splice sites
3' ss Seq
CTTTCTCCTCCTTCTCATAGTCA
3' ss Score
9.35
5' ss Seq
CTAGTGAGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
GTCTGGAGCCAGGAACCGAGTACACCATCTATGTCATCGCACTGAAGAACAATCAGAAGAGTGAGCCCCTGATTGGGAGGAAAAAGACAG
Seq A exon
TCAACGAAGGCCTGAACCAGCCTACGGATGACTCATGCTTTGACCCTTACACGGTTTCCCATTACGCCGTTGGAGAGGAATGGGAGCGGTTATCTGACTCTGGCTTTAAGCTCACTTGCCAGTGCTTGGGCTTTGGCAGTGGTCATTTCAGATGCGATTCATCTA
Seq C2 exon
AATGGTGCCATGACAACGGTGTCAACTACAAGATCGGAGAGAAGTGGGATCGTCAGGGAGAAAATGGCCAGCGGATGAGCTGCACATGTCTCGGGAATGGAAAGGGAGAATTCAAATGCGATCCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014288_MULTIEX1-4/4=C1-C2
Average complexity
C2
Mappability confidence:
80%=80=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.387 A=0.054 C2=0.047
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(27.2=71.0)
A:
PF0003913=fn1=WD(100=71.4)
C2:
PF0003913=fn1=WD(100=88.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGCCAGGAACCGAGTA
R:
GGGATCGCATTTGAATTCTCCCT
Band lengths:
213-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]