GgaEX1066073 @ galGal4
Exon Skipping
Gene
ENSGALG00000003578 | fn1
Description
fibronectin precursor [Source:RefSeq peptide;Acc:NP_001185641]
Coordinates
chr7:4335791-4338300:-
Coord C1 exon
chr7:4338162-4338300
Coord A exon
chr7:4336533-4336697
Coord C2 exon
chr7:4335791-4335916
Length
165 bp
Sequences
Splice sites
3' ss Seq
TTCTTCTCTTTTCGTTCCAGTGT
3' ss Score
10.18
5' ss Seq
CTAGTGAGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
TTCAGGGTTCCTGGCACTTCCTCCAGTGCTACGCTCACTGGCCTCACCAGAGGTGCCACCTACAACATCATAGTAGAAGCCCTGAAGGATCACCGCAGACAAAAGGTGCTGGAGGAGGTGGTCACAGTTGGCAATACTG
Seq A exon
TGTCTGAAGGACTAAACCAGCCGGCCGACGACACCTGCTATGATACTTACACTGGCTCCTTCTATTCCATTGGCGAGGAGTGGGAGCGATTATCTGAAACGGGCTTTAAACTCTGGTGCCAGTGCTTAGGCTTTGGCAGTGGTCACTTCAGATGCGATTCCTCTA
Seq C2 exon
AGTGGTGCCACGATAATGGTGTGAACTACAAGATTGGGGAGAAGTGGGACCGGCAGGGGGAGAATGGCCAGATGATGAGCTGCACCTGCCTCGGGAATGGAAAAGGAGAATTCAAGTGTGAACCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003578-'60-64,'60-63,61-64
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.138 A=0.036 C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(42.9=70.2)
A:
PF0003913=fn1=WD(100=71.4)
C2:
PF0003913=fn1=WD(100=88.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGTTCCTGGCACTTCCTC
R:
CTCCTTTTCCATTCCCGAGGC
Band lengths:
244-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]