DreEX0033161 @ danRer10
Exon Skipping
Gene
ENSDARG00000006526 | fn1b
Description
fibronectin 1b [Source:ZFIN;Acc:ZDB-GENE-030131-6545]
Coordinates
chr1:4809619-4811665:-
Coord C1 exon
chr1:4811527-4811665
Coord A exon
chr1:4811283-4811444
Coord C2 exon
chr1:4809619-4809744
Length
162 bp
Sequences
Splice sites
3' ss Seq
TGTTCCCTTCAACCCAACAGTTC
3' ss Score
5.67
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
ATGCGTGTCCCAGGAACATCCACAACTGCCACTCTTATTGGTCTCACCTCTGGTGCGTCCTATAATGTCATTGTGGAGGCCTTGAAAGGAGCCCTCAAGCACAAAATCCTAGAGGAAGTCGTCACTGCTGGAAATACAG
Seq A exon
TTCCAGGAGATGCTACATCCAGCAAGGACTCGTGTTATGACACTTTCACGGCCACTCACCACGATGTCGGAGCGGAATGGGAGCGCATGTCTGATACAGGCTTTAAACTCTGGTGTAGATGTCTTGGATTGGGAAGTGGACATTTCAGATGTGACTCTTCCA
Seq C2 exon
AATGGTGTCACGACAGCGGAAATAACTACCGCATTGGCGAAAAGTGGGAGCGTCGGGCAGAAAACGGTCACTTGATGAGTTGCACTTGCTTGGGCAATGGCAAAGGAGAGTTCAAGTGTGAACCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006526-'53-58,'53-56,54-58
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.213 A=0.036 C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(43.0=72.3)
A:
PF0003913=fn1=WD(100=72.7)
C2:
PF0003913=fn1=WD(100=88.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGAACATCCACAACTGCC
R:
AACTCTCCTTTGCCATTGCCC
Band lengths:
242-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]