BtaEX6012376 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010050 | COL16A1
Description
collagen, type XVI, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2193]
Coordinates
chr2:122567546-122568609:+
Coord C1 exon
chr2:122567546-122567581
Coord A exon
chr2:122567939-122568001
Coord C2 exon
chr2:122568565-122568609
Length
63 bp
Sequences
Splice sites
3' ss Seq
TCTGCCTCTTCCTCCTTCAGGGC
3' ss Score
12.82
5' ss Seq
GATGTACGG
5' ss Score
3.68
Exon sequences
Seq C1 exon
GGACCCTCAGGACTCCCCGGCTCCACAGGCCAGAAG
Seq A exon
GGCCAGAAAGGCGAGAAGGGAGACGGAGGCGTGAAGGGCTCGCCGGGAAAGCCAGGCCGAGAT
Seq C2 exon
GGCCGGCCAGGAGAAGTCTGTGTCATAGGGCCCAAAGGGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010050-'19-24,'19-23,20-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(19.6=100)
A:
PF0139113=Collagen=FE(35.7=100),PF0139113=Collagen=PU(18.2=57.1)
C2:
PF0139113=Collagen=PD(16.7=66.7),PF0139113=Collagen=PU(11.9=46.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCTCAGGACTCCCCG
R:
TGGGCCCTATGACACAGACTT
Band lengths:
69-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]