BtaEX6013742 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013801 | PBX1
Description
pre-B-cell leukemia homeobox 1 [Source:HGNC Symbol;Acc:HGNC:8632]
Coordinates
chr3:4273216-4286050:-
Coord C1 exon
chr3:4285860-4286050
Coord A exon
chr3:4278465-4278600
Coord C2 exon
chr3:4273216-4273375
Length
136 bp
Sequences
Splice sites
3' ss Seq
TTTCCTTGCTCTTTATGAAGGCG
3' ss Score
6.19
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GCATGTAACGAGTTCACCACCCATGTGATGAACCTCCTGCGAGAACAAAGCCGGACCAGGCCTATTTCCCCAAAGGAGATCGAGCGGATGGTCAGTATCATCCACCGCAAGTTCAGCTCCATCCAGATGCAGCTCAAGCAGAGCACGTGTGAGGCCGTCATGATCCTGCGTTCCCGGTTCCTGGATGCGCG
Seq A exon
GCGGAAGAGACGAAATTTCAACAAGCAAGCGACGGAAATCCTGAATGAATATTTCTATTCCCATCTCAGCAACCCTTACCCCAGTGAGGAAGCCAAAGAGGAGCTAGCCAAGAAGTGCGGCATCACAGTGTCCCAG
Seq C2 exon
GTATCAAACTGGTTTGGAAATAAACGAATCCGGTACAAGAAGAACATAGGTAAATTTCAAGAGGAAGCCAATATTTATGCTGCCAAAACAGCTGTCACTGCTACCAATGTGTCAGCCCATGGAAGCCAAGCTAACTCACCCTCAACTCCCAACTCAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013801-'13-11,'13-9,15-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.219 A=0.022 C2=0.333
Domain overlap (PFAM):
C1:
PF037928=PBC=PD(30.8=95.3),PF070286=DUF1319=PD(55.9=81.2),PF040917=Sec15=PD(63.8=79.7),PF0004624=Homeobox=PU(0.1=0.0)
A:
PF0004624=Homeobox=PU(75.0=97.8)
C2:
PF0004624=Homeobox=PD(21.7=24.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGGAGATCGAGCGGATGG
R:
TTCCATGGGCTGACACATTGG
Band lengths:
245-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]