GgaEX1042239 @ galGal4
Exon Skipping
Gene
ENSGALG00000003429 | PBX1A
Description
pre-B-cell leukemia transcription factor 1 [Source:RefSeq peptide;Acc:NP_990077]
Coordinates
chr8:5205132-5209034:-
Coord C1 exon
chr8:5208844-5209034
Coord A exon
chr8:5207929-5208064
Coord C2 exon
chr8:5205132-5205291
Length
136 bp
Sequences
Splice sites
3' ss Seq
CCTTCCTTCTTCCCTCTAAGGCG
3' ss Score
8.48
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GCGTGCAACGAATTCACCACCCACGTGATGAACCTGCTGCGTGAGCAGAGCCGGACCCGGCCCATCTCACCAAAGGAGATAGAGCGGATGGTGAGCATCATCCACCGCAAGTTCAGCTCCATCCAGATGCAGTTGAAGCAAAGCACGTGTGAAGCCGTCATGATCTTGCGCTCCCGATTTCTGGACGCACG
Seq A exon
GCGGAAGAGAAGAAACTTCAACAAGCAGGCTACGGAAATCCTGAATGAGTATTTCTATTCCCATCTCAGCAACCCTTACCCCAGTGAGGAAGCCAAAGAAGAGCTAGCCAAGAAATGTGGCATCACAGTCTCACAG
Seq C2 exon
GTATCAAACTGGTTTGGAAATAAGAGAATCCGGTACAAGAAGAACATAGGTAAATTTCAAGAGGAAGCCAATATTTATGCTGCCAAAACGGCTGTCACGGCTACCAATGTGTCAGCCCATGGAAGCCAGGCTAACTCACCCTCAACTCCCAATTCAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003429-'33-16,'33-11,34-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.219 A=0.022 C2=0.333
Domain overlap (PFAM):
C1:
PF037928=PBC=PD(30.8=95.3),PF070286=DUF1319=PD(55.3=81.2),PF040917=Sec15=PD(64.2=81.2),PF0004624=Homeobox=PU(0.1=0.0)
A:
PF0004624=Homeobox=PU(75.0=97.8)
C2:
PF0004624=Homeobox=PD(21.7=24.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGAGCGGATGGTGAGCATCA
R:
GAGTTAGCCTGGCTTCCATGG
Band lengths:
249-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]