RnoEX0063672 @ rn6
Exon Skipping
Gene
ENSRNOG00000004693 | Pbx1
Description
PBX homeobox 1 [Source:RGD Symbol;Acc:1308213]
Coordinates
chr13:86432220-86444930:-
Coord C1 exon
chr13:86444740-86444930
Coord A exon
chr13:86436590-86436725
Coord C2 exon
chr13:86432220-86432379
Length
136 bp
Sequences
Splice sites
3' ss Seq
TTCCCTTTCTCGTTCTGAAGGCG
3' ss Score
7.72
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GCATGCAATGAATTCACCACCCACGTGATGAACCTCCTTCGGGAGCAAAGCCGGACCAGACCCATCTCTCCGAAGGAGATCGAGCGGATGGTCAGCATTATTCACCGCAAGTTCAGCTCCATCCAGATGCAGCTGAAGCAAAGCACGTGCGAGGCAGTCATGATCCTGCGCTCCCGGTTTCTGGATGCGAG
Seq A exon
GCGGAAGAGACGGAATTTCAACAAGCAAGCCACAGAAATTCTGAATGAATATTTCTATTCCCATCTCAGCAACCCTTACCCCAGTGAGGAAGCCAAAGAGGAGTTAGCCAAGAAGTGCGGCATCACAGTCTCCCAG
Seq C2 exon
GTATCAAACTGGTTTGGAAATAAGCGAATCCGGTACAAGAAGAACATAGGTAAATTTCAAGAGGAAGCCAATATTTATGCTGCCAAAACGGCTGTCACTGCCACCAATGTGTCAGCCCATGGAAGCCAAGCTAACTCGCCCTCCACTCCCAACTCAGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004693-'2-5,'2-3,6-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.224 A=0.043 C2=0.333
Domain overlap (PFAM):
C1:
PF037928=PBC=PD(42.4=95.3),PF070286=DUF1319=PD(62.7=81.2),PF040917=Sec15=PD(61.8=73.4),PF0004624=Homeobox=PU(0.1=0.0)
A:
PF0004624=Homeobox=PU(75.0=97.8)
C2:
PF0004624=Homeobox=PD(21.7=24.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGCGGATGGTCAGCATTAT
R:
GCGAGTTAGCTTGGCTTCCAT
Band lengths:
250-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]