BtaEX6015151 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000098 | SETDB1
Description
SET domain, bifurcated 1 [Source:HGNC Symbol;Acc:HGNC:10761]
Coordinates
chr3:19846125-19847867:-
Coord C1 exon
chr3:19847239-19847867
Coord A exon
chr3:19846372-19846400
Coord C2 exon
chr3:19846125-19846257
Length
29 bp
Sequences
Splice sites
3' ss Seq
TCACTCGCTCTGTTTTCCAGGAC
3' ss Score
10.81
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
CCTCTGACAGCAGTGGTGTAGACTTGAAGGACCAGGAAGACGGCAACAGTGGTACAGAGGACCCCGAGGAGTCCAATGACGACAGCTCAGATGACAACTTCTGTAAGGACGAGGACTTCAGCACCAGCTCGGTGTGGCGCAGCTATGCTACCCGACGGCAGACCCGGGGCCAGAAGGAGAATGGATTGTCTGAGATGTCTTCCAAGGACTCTCGCCCCCCAGACCTAGGGCCCCCACATATTCCTGTCCCTCCATCAATCCCTGTAGGTGGCTGCAATCCACCTTCCTCTGAAGAGACACCTAAGAACAAAGTGGCCTCGTGGTTGAGCTGCAACAGTGTCAGTGAAGGTGGCTTTGCTGACTCTGATAGCCGTTCATCCTTCAAGACTAGTGAAGGTGGGGAAGGCCGCACTGGGGGAAGCAGAGGGGAAGCTGAGAAGGCTTCCACCTCAGGGCTTGGCTTCAAGGATGAGGGAGACATCAAGCAGGCCAAGAAAGAG
Seq A exon
GACCCTGATGACCGAAACAGGATGTCAAT
Seq C2 exon
AGTTACTGAAAGCTCTCGAAATTATGGTTACAATCCTTCTCCTGTGAAGCCTGAAGGACTTCGCCGCCCACCAAGTAAAACTAGTATGCATCAGAGCCGACGACTCATGGCCTCTGCTCAGCCAAACCCTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000098-'32-28,'32-27,33-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.767 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(46.1=100)
A:
PF0085623=SET=FE(2.0=100)
C2:
PF0085623=SET=FE(9.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTTCAAGGATGAGGGAGA
R:
TAGTTTTACTTGGTGGGCGGC
Band lengths:
126-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]