RnoEX0079910 @ rn6
Exon Skipping
Gene
ENSRNOG00000021143 | Setdb1
Description
SET domain, bifurcated 1 [Source:RGD Symbol;Acc:1308370]
Coordinates
chr2:196498353-196499876:-
Coord C1 exon
chr2:196499248-196499876
Coord A exon
chr2:196498598-196498626
Coord C2 exon
chr2:196498353-196498482
Length
29 bp
Sequences
Splice sites
3' ss Seq
TTCCCTTGTTCCTTTTCCAGGAC
3' ss Score
12.61
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
CCTCTGACAGCAGTGGGGTGGATATGAAGGACCAGGAGGATGGCAACAGTGGCTCAGAGGACCCTGAGGAGTCCAACGACGACAGCTCCGATGACAACTTCTGTAAGGACGAGGACTTCAGCACCAGTTCAGTGTGGCGTAGCTATGCAACCCGGAGGCAGACTCGGGGTCAGAAGGAGAGTGAACTGTCTGAGGTGACTTCAAAGGACTCCCGCGCCCCAGACCGTGGGCCTCCCCACGTCCCTATCACTCCCTCAGGATCTGTAGGGGGTTGCAATCCACCTTCCTCCGAAGAGACACCCAAGAACAAGGTGGCCTCATGGTTGAGCTGCAATAGTGTCAGTGAAGGTGGATTTGCTGACTCTGACAGCCGTTCCTCCTTTAAGACTAGTGAAGGTGGAGATGGCCGTGCTGGGGGAGGCCGGGGAGAGGCTGAAAGAGCCTCTACCTCAGGATTGAGCTTCAAGGATGAAGGAGACAGTAAGCAATCTAAAAAAGAG
Seq A exon
GACCCTGAGGACCGAAACAAGATGTCAGT
Seq C2 exon
AGTTACTGAAGGCTCTCAGAATCATGGACACAATCCTCCCATGAAGTCTGAAGGGCTTCGCCGACCAGCTAGTAAAATTTCTATGCTCCAGAGCCAGCGAGTTGTGACTTCTACTCAGTCAAACCCTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021143-'40-23,'40-22,41-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.810 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(46.2=100)
A:
PF0085623=SET=FE(2.0=100)
C2:
PF0085623=SET=FE(9.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAAAGAGCCTCTACCTCA
R:
AGCCCTTCAGACTTCATGGGA
Band lengths:
126-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]