BtaEX6016180 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007330 | STXBP3
Description
syntaxin binding protein 3 [Source:HGNC Symbol;Acc:HGNC:11446]
Coordinates
chr3:34681546-34691435:-
Coord C1 exon
chr3:34691350-34691435
Coord A exon
chr3:34683093-34683241
Coord C2 exon
chr3:34681546-34682265
Length
149 bp
Sequences
Splice sites
3' ss Seq
GTTTGTGTTTATTTTTTTAGTGC
3' ss Score
8.4
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
GATGCCATTGATAACAGATTAGATTCAAAAGAGTGGCCATATTGTTCCCAGTGCCCAGCAGTCTGGAATGGCTCAGGAGCTGTAAG
Seq A exon
TGCTCGGCAAAAACCCAGAACTAATTATTTAGAGGATCGAAAAAATGGATCTAAGCTGATTGTTTTTGTGATTGGAGGGATTACATACTCTGAAATGCGTTGTGCTTATGAAGTTTCTCAGGCACATAAGTCCTGTGAAGTTATTATTG
Seq C2 exon
GATCCACGCATATTTTAACACCCAGAAAACTGTTGGATGATATAAAGATGCTGAATAAGCCCAAGGATAAAGTCTCCTTTACTAAAGATGAATAACATTTTGGGTGGGGAGCAATTTAGAGATTCTTATTAATTTGTTCAACTAAAATAGATCAAGACATTGTTGCTCTCATGTAATTTAAACTGTAAATATTTTAAGGAATAATGACTTTCAGATGTGTTTCTTAAGGGACTGTTTATGATTACATATCATTGGATTTGCCATTTTTAATTTAAATATTATTGCTGCTTTGTGGATGATGAGAAGAAATGTTAAAATGCTTTCTAAAAGGAAATGTTTTGAGCTTTGGAACAGAATATATTATAGTTGTGGTTAATTTTTCACAGCCTACCTGTGTACATACTAATTACTTATTAGATACTTGTCTGTCTTATGCTGGAATATAGTTTTTGGGGAAACAATTTTAAATGAAAAGATTATAAAAGTGAAAACTGTAAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007330-'20-28,'20-26,21-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.118 C2=0.097
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(5.1=100)
A:
PF0099518=Sec1=FE(9.2=100)
C2:
PF0099518=Sec1=PD(2.6=43.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCTGGAATGGCTCAGGAG
R:
CCCTTAAGAAACACATCTGAAAGTCA
Band lengths:
258-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]