HsaEX0062748 @ hg19
Exon Skipping
Gene
ENSG00000116266 | STXBP3
Description
syntaxin binding protein 3 [Source:HGNC Symbol;Acc:11446]
Coordinates
chr1:109342842-109352148:+
Coord C1 exon
chr1:109342842-109342927
Coord A exon
chr1:109350023-109350171
Coord C2 exon
chr1:109351405-109352148
Length
149 bp
Sequences
Splice sites
3' ss Seq
TTTTTTAAATTACTTTTTAGTGC
3' ss Score
7.74
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
GATGCTATTGATAATAGATTAGATTCAAAAGAATGGCCATATTGTTCCCAGTGTCCAGCAGTATGGAATGGTTCAGGAGCTGTAAG
Seq A exon
TGCTCGCCAGAAACCCAGAGCTAATTATTTAGAAGACCGAAAAAATGGGTCAAAGCTGATTGTTTTTGTAATTGGAGGGATCACATACTCTGAAGTGCGTTGTGCTTATGAAGTTTCTCAGGCACATAAATCCTGTGAAGTTATTATTG
Seq C2 exon
GTTCTACACATGTTTTAACACCCAAAAAGCTGTTGGATGATATAAAGATGCTGAATAAACCCAAGGATAAAGTCTCCTTAATTAAAGATGAATAGCATTTCTTTTTGGAGGGTTTAGAGATTCTTACTAATATGTTGAACTAAAATAGAAAGAAAATGTTGCTGTCATGTAATTTAAACAATGTAAATATTTTATGGAATAATGGCTTTTCAAATACATTTCTTAAGGAACTGTTTATGATTATTACTGGATTTGTCATTTTTGATAATTTAAATATTGCTGCTGCTTTGTAGATGATGAGAAGAAATGTTAAAGTGCTTTCTAAAAGGAAATTTTTTCACCTTTGGAGGAGAATATATTAGAGTTGTGGGTAATTTTTCACAGCCACCTATGTACATACTAATTACCCATTGGATACTTATATCTAAAAGTCTCATGCTGAAGTATAGTTTTTGGGAAAGAATGATTTTAAATAAAGAGATTGTAAAAGTAAAAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116266_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.098 C2=0.000
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(5.1=100)
A:
PF0099518=Sec1=FE(9.2=100)
C2:
PF0099518=Sec1=PD(2.6=43.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATTAGATTCAAAAGAATGGCCAT
R:
TACATGACAGCAACATTTTCTTTCT
Band lengths:
242-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)