DreEX0076296 @ danRer10
Exon Skipping
Gene
ENSDARG00000008142 | stxbp3
Description
syntaxin binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2833]
Coordinates
chr23:1682795-1689576:+
Coord C1 exon
chr23:1682795-1682880
Coord A exon
chr23:1684985-1685133
Coord C2 exon
chr23:1688362-1689576
Length
149 bp
Sequences
Splice sites
3' ss Seq
GGTGTTGACCGTGTTATTAGTGC
3' ss Score
2.05
5' ss Seq
TCGGTAAGA
5' ss Score
10.53
Exon sequences
Seq C1 exon
GACGCAGTGGAAAATAAACTGGATATCAAAGACTGGCCGTTTCAGTCTGAATGTCCGTCTGCGTGGAACGGCTCTCGGGCTGTAAG
Seq A exon
TGCACGGCAGAAGCACAAGGGCAGCTCTCCAGGGGACATGAAGAACGGCTCGCGCCTCATCATCTTCGTTCTGGGTGGAGTCAGCTACTCTGAGATGCGCTGCGCTTATGAAGTCACCAACACTAATAAATCCTGTGAGGTCATCATCG
Seq C2 exon
GCTCGACACACATCCTCACTCCTCGCAGTCTCCTGGAGGACATTTATAACCTGGGGAAAAAACCCATGGACACTTTGACCATCGAGGAGGGCAAAGTCTGAGCTCGTCCCGCCGCAATCCATCCCCCAGGACTGAAGGGAACAGATCTGCATTTACACCACACTATTCATTCATTCAATGTATAAAACAAACAGTGATCCACAGTCTGAAGGGATCACACGCCTAAATATGCTGCATTCAGGTTATATACGGTATATTCATCATGATATTAAGTGTTACACAACTAACTCCACTGAAGTGTGTTGAAGTAGAGCTCAATAAAGCATCTGTTAAAGCAGGGGTGTCCTGGAGGGCCGGTGTCCTGCTCATCTTAGCTCCGACTTGCTTCAACACACCTGCCTGCAAGTTTCTAGTATACCTAGTAAGAGCTTGATCAGCTTGTTCAGGTGTGTTTGATTAAGGTTGGAGCTAAACTCTACAGGACACCGGCCCTCCAGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000008142-'18-21,'18-20,20-21
Average complexity
S
Mappability confidence:
83%=80=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.069 A=0.225 C2=0.038
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(5.1=100)
A:
PF0099518=Sec1=FE(9.2=100)
C2:
PF0099518=Sec1=PD(2.6=41.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCTGAATGTCCGTCTGCG
R:
TCCCTTCAGACTGTGGATCACT
Band lengths:
258-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]