RnoEX0087379 @ rn6
Exon Skipping
Gene
ENSRNOG00000020392 | Stxbp3
Description
syntaxin binding protein 3 [Source:RGD Symbol;Acc:619968]
Coordinates
chr2:211595659-211600851:-
Coord C1 exon
chr2:211600766-211600851
Coord A exon
chr2:211597706-211597857
Coord C2 exon
chr2:211595659-211596345
Length
152 bp
Sequences
Splice sites
3' ss Seq
CTCTGTGTTTTACTTTCTAGTGC
3' ss Score
10.01
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
GATGCCATTGATAATAGATTGGATTCCAAAGAATGGCCATACTGTTCCCGGTGCCCAGCGGTGTGGAATGGCTCTGGAGCTGTAAG
Seq A exon
TGCTCGCCAGAAACCCAGAACCAACTATTTAGAGCTGGACCGGAAAAATGGCTCGAGGCTGATTATTTTTGTAATTGGAGGAATTACATACTCTGAGATGCGTTGTGCTTATGAAGTTTCTCAGGCACATAAATCCTGTGAAGTTATTATTG
Seq C2 exon
GTTCCACACATATTTTAACACCCAGAAAGCTGCTGGATGACATAAAAATGCTGAATAAATCCAAGGATAAAGTTTCCTTTCTTAAGGATGAGTAGCTTTTTTATTGTGGTTTAGAGGTTTTGTTAACATGCACAGCTAAAGCAGATGCTGCTGCGGTCACTGAAGCGGTGTAAATAGTGTGTGGAGGAACACGGTCTTCAGGTGGACACCTTGAGGACGCTTATGTTACTGGATTTGCCATTTCTAATAATTTAAGTACTGTTGCTGCTTTGGTCAAGACATGATGTTAACGGGCCTTGTAATCAGGCAGTTTTCACCTTGGAGCAGAACCTGTTCTGAGGTGTGGGTGTTTTCACAGCCAGCTGTATATGTGCCCACTAATTACTCACTGGATACTTATGCTGAAATTAGTGCGGGCAAAAACGACTTTGAATGAAGAGATCATAAACGTAAAAACTGTAAATGTATGTATGATAGAGTTATTATAATGCAGTTTCTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020392-'29-28,'29-26,31-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.019 C2=0.000
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(5.1=100)
A:
PF0099518=Sec1=FE(9.3=100)
C2:
PF0099518=Sec1=PD(2.6=43.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGGCCATACTGTTCCCGG
R:
ACCGTGTTCCTCCACACACTA
Band lengths:
251-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]