MmuEX6073472 @ mm10
Exon Skipping
Gene
ENSMUSG00000027882 | Stxbp3
Description
syntaxin binding protein 3 [Source:MGI Symbol;Acc:MGI:107362]
Coordinates
chr3:108793176-108797466:-
Coord C1 exon
chr3:108797381-108797466
Coord A exon
chr3:108794802-108794953
Coord C2 exon
chr3:108793176-108793864
Length
152 bp
Sequences
Splice sites
3' ss Seq
CTTTGTGTTTTACTTTCTAGTGC
3' ss Score
9.97
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
GATGCCATTGATAATAGATTAGATTCCAAAGAGTGGCCGTATTGTTCCCGGTGCCCAGCAGTGTGGAATGGCTCTGGAGCTGTGAG
Seq A exon
TGCTCGCCAGAAACCCAGAACTAACTACTTAGAGCTGGACCGGAAAAATGGGTCAAGGCTGATTATTTTTGTAATTGGAGGAATTACGTACTCTGAGATGCGGTGTGCTTATGAAGTTTCCCAGGCACATAAATCCTGTGAGGTTATTATTG
Seq C2 exon
GTTCCACACATATTTTAACACCCAGAAAGCTCCTGGATGATATAAAAATGCTGAATAAATCAAAGGATAAAGTTTCCTTTAAGGATGAGTAACTTTTTATGGTTGTCGTTTAGAGGTTTTGTTAATACGATCGGCTACAGCAAATGTTGCTGTTGTAATTTAAGCGGTGTAAATAGTGTATGGAGTAATGTGGTTTTCAAGTGTACATCTTACAGAAGCTTATGTGTTATGGATTTGCCATTTCTAATAATTTAAATACTGTTGCTGCTTTGTACAAGATCTGACACTACAGGGCTTTCTAATCAGGATGTCTTCACCCTAGGGACAGAATCTGTTAGGAGGGATGGGTAGTTTTTACAGCCTGCTGTATACATACTAGTTACTGTATACTTACGCTGAAATATAGTGTTGGGGGCAAAATGATTTTGAATGAAGAGATTATAAAAGTAAAAACTGTAAATGTATGTATGATAGAATTATTTCTTATAAGTGCAGTTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027882-'42-32,'42-31,45-32
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.033
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(5.1=100)
A:
PF0099518=Sec1=FE(9.3=100)
C2:
PF0099518=Sec1=PD(2.6=45.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGTGGCCGTATTGTTCCC
R:
ACTCCATACACTATTTACACCGCT
Band lengths:
244-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types