GgaEX1056318 @ galGal4
Exon Skipping
Gene
ENSGALG00000002001 | STXBP3
Description
syntaxin-binding protein 3 [Source:RefSeq peptide;Acc:NP_001073202]
Coordinates
chr8:1283405-1289487:+
Coord C1 exon
chr8:1283405-1283490
Coord A exon
chr8:1285950-1286098
Coord C2 exon
chr8:1288166-1289487
Length
149 bp
Sequences
Splice sites
3' ss Seq
TGTAATGAAATGCATTGCAGTGC
3' ss Score
4.06
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
Exon sequences
Seq C1 exon
GATGCTATAGAAAACAAACTGGATTCCAAAGAATGGCCTTATTGTTCCCAGTGTCCTCCTACCTGGAATGGCTCAGGAATAGTAAG
Seq A exon
TGCTCGCCAGAAGCCTAAAGGGAGTTATCAAGATGAGCGAAGGAGTAATGCAAGATTGATTATATTTGTGATTGGAGGAATTACGTACTCCGAGATGCGCAGCGCTTATGAAGTTTCTCAAACCTACAAGTCTTGTGAAGTGATCGTTG
Seq C2 exon
GTTCTACGCATATTTTGACACCTAGAAGACTACTGGATGAAGTCAAGAGCCTCAATAAACCGAAGGATACAGTCTGCATTAAAGATGAGTAGGAACAGTGATGCTTATGATGCTTTAGGCGAAGACAAATAGTGTAGAACATGTACATATTCTCACACAGCTGACTTTTCCAGTTAGGGTACTAGGGCACAGTATGTTTCTGACTAATTGAATGTCACTTTAAATTATTGAATTGCTGCTTTTCTGGGGGAAGTAGAAGGCAGAAGGGGAAAAAATAATCAAGGTTTGCTTTTCCGAAGGGTGTGTTTGTTCCTAATAAATTATATTATATGAAAGTTATTCAGATAATATATAAACTCTATTTGTTTTTGAAAACTGAAACTTCTTTCTAATAGTTTGTTTCTAAAAATGATTGAATTAAAAAGGGTGTAGACACTCAAAGGCTTCAGAAGGAAGTTTGTAAATAGAAGTGATAAAACATGCCACGCAAGTGCGGTGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002001_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=0.216 C2=0.000
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(5.1=100)
A:
PF0099518=Sec1=FE(9.1=100)
C2:
PF0099518=Sec1=PD(2.6=45.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTTATTGTTCCCAGTGTCC
R:
TGTGCCCTAGTACCCTAACTGG
Band lengths:
243-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]