BtaEX6016260 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021217 | COL11A1
Description
Bos taurus collagen, type XI, alpha 1 (COL11A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001166509]
Coordinates
chr3:40646679-40647870:+
Coord C1 exon
chr3:40646679-40646786
Coord A exon
chr3:40647073-40647126
Coord C2 exon
chr3:40647817-40647870
Length
54 bp
Sequences
Splice sites
3' ss Seq
CTTTTAAAACATTATCTTAGGGT
3' ss Score
6.17
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
Exon sequences
Seq C1 exon
GGTCCCAAAGGAGAAAGAGGAGAGAAAGGAGAAGCTGGTCCCCCGGGTGCTGCTGGACCTCCTGGTGCTAAGGGACCGCCAGGTGATGATGGCCCTAAGGGTAATCCG
Seq A exon
GGTCCTGTTGGTTTTCCTGGAGATCCTGGTCCTCCTGGTGAGCCTGGCCCTGCA
Seq C2 exon
GGTCAAGATGGTGTTGGTGGTGACAAGGGTGAAGATGGAGATCCTGGACAACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021217-'59-60,'59-59,60-60=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAAGGAGAAGCTGGTCCCC
R:
CGGTTGTCCAGGATCTCCATC
Band lengths:
140-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]