GgaEX1016291 @ galGal4
Exon Skipping
Gene
ENSGALG00000005180 | COL11A1
Description
collagen, type XI, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2186]
Coordinates
chr8:10268836-10269537:+
Coord C1 exon
chr8:10268836-10268943
Coord A exon
chr8:10269132-10269185
Coord C2 exon
chr8:10269484-10269537
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCCTGATTTACCTAGGGT
3' ss Score
7.93
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GGTCCAAAAGGTGAAAGGGGAGAAAAAGGTGAGGCTGGTCCACCTGGAGCAGCTGGACCACCAGGTGCTAAAGGACCTCCAGGTGATGATGGGCCTAAGGGTAACCCA
Seq A exon
GGTCCGGTTGGTTTTCCTGGAGATCCTGGTCCCCCTGGAGAGCCTGGTCCAGCT
Seq C2 exon
GGTCAAGATGGTGTTGGTGGAGAAAAGGGTGAAGATGGTGATCCTGGTCAACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005180_MULTIEX2-5/5=4-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGGAGAAAAAGGTGAGGCT
R:
CCAGGATCACCATCTTCACCC
Band lengths:
140-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]