DreEX6026161 @ danRer10
Exon Skipping
Gene
ENSDARG00000009014 | col11a1b
Description
collagen, type XI, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-070912-607]
Coordinates
chr2:15745709-15746577:-
Coord C1 exon
chr2:15746470-15746577
Coord A exon
chr2:15746218-15746271
Coord C2 exon
chr2:15745709-15745762
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTAATTTAGGGT
3' ss Score
11.16
5' ss Seq
GGTGTACGT
5' ss Score
4.36
Exon sequences
Seq C1 exon
GGACCCAAAGGTGAGCTTGGAGAGAAAGGAGAAGCTGGTCCTCCGGGAGCTGCAGGACCTGCCGGTGGAAGAGGACCTCCTGGAGATGACGGTCCCAAAGGAAACCCA
Seq A exon
GGTCCTATCGGCTTCCCTGGAGATCCAGGTCCCCCTGGTGAGCCCGGAGTTGGT
Seq C2 exon
GGACTGGATGGACTTCCCGGAGACAAGGGAGATGATGGAGATGCCGGTCAGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009014-'55-55,'55-54,57-55=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAAAGGTGAGCTTGGAGAG
R:
ATCTCCCTTGTCTCCGGGAAG
Band lengths:
138-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]