BtaEX6016266 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021217 | COL11A1
Description
Bos taurus collagen, type XI, alpha 1 (COL11A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001166509]
Coordinates
chr3:40626039-40638081:+
Coord C1 exon
chr3:40626039-40626092
Coord A exon
chr3:40626607-40626714
Coord C2 exon
chr3:40638028-40638081
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTTGTATTGGTCTTCTCTAGGGA
3' ss Score
9.42
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GGTCCTCCTGGTCCCCCAGGTCTTCAAGGTCCAGTTGGTGCCCCTGGAATTGCT
Seq A exon
GGAGGTGATGGTGAACCAGGTCCCAGAGGTCAGCAGGGGATGTTTGGACAAAAAGGTGATGAGGGTGCCAGAGGTTTCCCAGGACCTCCTGGTCCCATAGGTCTTCAG
Seq C2 exon
GGTCTTCCAGGCCCACCTGGTGAAAAAGGAGAAAATGGGGATGTTGGTCCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021217-'52-54,'52-53,53-54=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCTCCTGGTCCCCCA
R:
ACCAACATCCCCATTTTCTCCT
Band lengths:
102-210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]