GgaEX6044068 @ galGal4
Exon Skipping
Gene
ENSGALG00000005180 | COL11A1
Description
collagen, type XI, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2186]
Coordinates
chr8:10258266-10260983:+
Coord C1 exon
chr8:10258266-10258319
Coord A exon
chr8:10258996-10259103
Coord C2 exon
chr8:10260930-10260983
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTCTTGCTCTTTCCAAATAGGGA
3' ss Score
10.09
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GGTCCTCCAGGTCCACCAGGTCTCCAGGGTCCTGTTGGTGCTCCTGGCATAGCT
Seq A exon
GGAGGTGATGGGGAGCCAGGCCCAAGAGGTCAGCAAGGAATGTTTGGACAAAAAGGTGATGAAGGTCCTCGAGGCTTCCCTGGCCCTCCAGGCCCTATTGGCTTACAG
Seq C2 exon
GGTTTGCCTGGCCCACCAGGTGAAAAAGGTGAAAATGGGGATGTGGGCCCGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005180-'60-62,'60-60,61-62=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(27.4=100)
A:
PF0139113=Collagen=FE(56.5=100)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTCCAGGTCCACCAGG
R:
CATCGGGCCCACATCCCC
Band lengths:
107-215
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]