BtaEX6016951 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008921 | NEXN
Description
nexilin (F actin binding protein) [Source:HGNC Symbol;Acc:HGNC:29557]
Coordinates
chr3:67029091-67029799:-
Coord C1 exon
chr3:67029608-67029799
Coord A exon
chr3:67029325-67029403
Coord C2 exon
chr3:67029091-67029239
Length
79 bp
Sequences
Splice sites
3' ss Seq
TAATTTATTTACCCATCTAGATT
3' ss Score
6.33
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
ATTCTGCTTTCTTCATCTAAACCTATACCAAAAACCTATGTGCCAAAACTTGGCAAGGGTGATGTAAAGGATAAGTTTGAAGCCATGCAGAGAGCAAGGGAAGAAAGAAATCAAAGGAGATCTAGAGACGAAAAGCAAAGAAGAAAAGAACAATATATTAGAGAGAGAGAATGGAACAGGAGAAAGCAGGAG
Seq A exon
ATTAAAGAAATGCTTGCTTCTGATGATGAAGAAGAGGTATCTTCTAAAGTAGAAAAGGCTTATGTCCCAAAGCTAACAG
Seq C2 exon
GAACTGTTAAAGGTAAATTTGCTGAAATGGAGAAACAAAGACAAGAGGAACAAAGGAAGAGGACGGAGGAGGAACGAAAACGCCGAATTGAGCAGGACCTTTTAGAGAAGAGGAAGATACAACGTGAATTAGCAAGAAGGGCTGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008921-'5-5,'5-4,6-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.922 A=0.852 C2=0.660
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGAGCAAGGGAAGAAAGA
R:
CCTCCTCCGTCCTCTTCCTTT
Band lengths:
178-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]