GgaEX0013099 @ galGal3
Exon Skipping
Gene
ENSGALG00000008945 | NEXN
Description
NA
Coordinates
chr8:19632115-19633947:-
Coord C1 exon
chr8:19633859-19633947
Coord A exon
chr8:19632349-19632430
Coord C2 exon
chr8:19632115-19632263
Length
82 bp
Sequences
Splice sites
3' ss Seq
TTCTATATTTCATCAACCAGATG
3' ss Score
6.47
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
CTTTCAGGTAGAAACTGAAAGCAATCTTAAACATACCAGGTGCAGAGCAGAATACCGTAACCATGAATGACATTGCACAGAAAACTGAG
Seq A exon
ATGAAAGAACTGCTTGCATCTGATGAAGACGATGATACAAAGTCATCTAAGACAGACAAAGGTTATGTTCCAAAGCTAATAG
Seq C2 exon
GAACTGTTAAAGGCAAGTTTGCAGAAATGGAGAAGCAAAGACAAGAAGAAGAGAGAAAAAGAACAGAAGAAGAAAGAAAGCGCAGAATTGAGCAGGATATGATTGAGAAAAGGAAAATTCAAAGAGAATTAGCCAAAAAAGCACAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008945-'0-4,'0-3,2-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.778 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAATCTTAAACATACCAGGTGCA
R:
TCCTGCTCAATTCTGCGCTTT
Band lengths:
167-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]