RnoEX0059428 @ rn6
Exon Skipping
Gene
ENSRNOG00000012512 | Nexn
Description
nexilin (F actin binding protein) [Source:RGD Symbol;Acc:708354]
Coordinates
chr2:257472129-257473402:-
Coord C1 exon
chr2:257473211-257473402
Coord A exon
chr2:257472520-257472595
Coord C2 exon
chr2:257472129-257472277
Length
76 bp
Sequences
Splice sites
3' ss Seq
GCATTTCTTTAACCACCTAGATT
3' ss Score
4.53
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
ATTCTGCTTTCTTCATCTAAACCTGTCCCCAAATCCTATGTGCCAAAACTCGGCAAGGGAGATGTAAAGGATAAATTTGAAGCCATGCAGAGGGCCAGGGAAGAAAGAAATCAAAGGCGATCTAGAGACGAAAAGCAAAGAAGAAAAGAACAATATATTAGAGAAAGAGAATGGAACAGGAGAAAGCAGGAG
Seq A exon
ATTAAAGACATGCTCGCTTCTGATGAGGAAGAAGAGCCGTCTAAAGTAGAAAAGGCTTATGTCCCAAAGCTCACAG
Seq C2 exon
GGACAGTTAAAGGCAAATTTGATGAAATGGAGAAACACAGACAGGAAGAACAAAGGAAGAGAACAGAAGAGGAGAGAAAACGCAGAATTGAGCAGGATCTGTTAGAAAAGAGGAAAATGCAGCGTGAATTAGCAAAAAGAGCTGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012512-'11-8,'11-7,12-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.938 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGATCTAGAGACGAAAAGCA
R:
CAGATCCTGCTCAATTCTGCGT
Band lengths:
178-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]