BtaEX6016967 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020761 | USP33
Description
Bos taurus ubiquitin specific peptidase 33 (USP33), mRNA. [Source:RefSeq mRNA;Acc:NM_001101139]
Coordinates
chr3:67205606-67213768:+
Coord C1 exon
chr3:67205606-67205714
Coord A exon
chr3:67212474-67212576
Coord C2 exon
chr3:67213700-67213768
Length
103 bp
Sequences
Splice sites
3' ss Seq
GATTTTTTTTTCCTCTGTAGCTC
3' ss Score
9.73
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTATGGAGGAGGACCAGCCGTCAACCATCTGTACATTTGTCACACTTGCCAGATTGAAGCGGAGAAAATTGAAAAAAGAAGAAAAACTGAATTGGAAATTTTTATTCGG
Seq A exon
CTCAACAGAGCATTCCAAGAGGAAGACTCTCCAGCTACTTTTTATTGCATCAGTATGCAATGGTTTAGAGAATGGGAAAGTTTTGTGAAGGGTAAAGATGGAG
Seq C2 exon
ATCCTCCAGGTCCTATTGATAACACTAAAATTGCAGTCACCAAATGTGGCAATGTGATACTCAGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020761-'29-36,'29-35,34-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.057 C2=0.250
Domain overlap (PFAM):
C1:
PF063377=DUSP=PD(17.8=35.1)
A:
PF063377=DUSP=PU(30.7=65.7)
C2:
PF063377=DUSP=FE(30.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATGGAGGAGGACCAGCCG
R:
CTTGCCTGAGTATCACATTGCCA
Band lengths:
178-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]