GgaEX6044527 @ galGal4
Exon Skipping
Gene
ENSGALG00000008974 | USP33
Description
ubiquitin specific peptidase 33 [Source:HGNC Symbol;Acc:HGNC:20059]
Coordinates
chr8:17911068-17913164:+
Coord C1 exon
chr8:17911068-17911176
Coord A exon
chr8:17912220-17912322
Coord C2 exon
chr8:17913096-17913164
Length
103 bp
Sequences
Splice sites
3' ss Seq
AAGCTCCTTTTTCCTTCCAGCTT
3' ss Score
7.53
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
Exon sequences
Seq C1 exon
GTATGGAGGAGGACCAGCGGTTAACCATCTGTATGTTTGTCATACCTGCCAAATAGAGTCTGAAAGACTTGAAAAAAGAAGGAAAAATGAATTGGAGATGTTTATTCGG
Seq A exon
CTTTATAGGGCATTCCAAGAAGAAGAATCTCCATCAACTTTTTACTGCATCAGTATGCAGTGGTTCAGAGAATGGGAAGAATTTGTAAAAGGCAAAGACAGTG
Seq C2 exon
ATCCCCCTGGTCCTATTGATAATGGTAAGATTGCAATAACAAAATGTGGAAATGCTGTGCTAAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008974-'39-50,'39-47,41-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.057 C2=0.250
Domain overlap (PFAM):
C1:
PF063377=DUSP=PD(17.6=35.1)
A:
PF063377=DUSP=PU(31.6=68.6)
C2:
PF063377=DUSP=FE(30.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATGGAGGAGGACCAGCGG
R:
CTTGTTTTAGCACAGCATTTCCACA
Band lengths:
178-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]