HsaEX0069761 @ hg38
Exon Skipping
Gene
ENSG00000077254 | USP33
Description
ubiquitin specific peptidase 33 [Source:HGNC Symbol;Acc:HGNC:20059]
Coordinates
chr1:77697863-77711855:-
Coord C1 exon
chr1:77711747-77711855
Coord A exon
chr1:77701369-77701471
Coord C2 exon
chr1:77697863-77697931
Length
103 bp
Sequences
Splice sites
3' ss Seq
GTTTTTTTTCCCCCTTGTAGCTT
3' ss Score
10.74
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTATGGTGGAGGACCAGCTGTCAACCATCTGTACATTTGTCATACTTGCCAAATTGAGGCGGAGAAAATTGAAAAAAGAAGAAAAACTGAATTGGAAATTTTTATTCGG
Seq A exon
CTTAACAGAGCGTTCCAAAAAGAGGACTCTCCAGCTACTTTTTATTGCATCAGTATGCAGTGGTTTAGAGAATGGGAAAGTTTTGTGAAGGGTAAAGATGGAG
Seq C2 exon
ATCCTCCAGGTCCTATTGACAATACTAAGATTGCAGTCACTAAATGTGGTAATGTGATGCTTAGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000077254_MULTIEX2-5/5=4-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.043 C2=0.186
Domain overlap (PFAM):
C1:
PF063377=DUSP=PD(17.8=35.1)
A:
PF063377=DUSP=PU(30.7=65.7)
C2:
PF139001=GVQW=PD(10.3=57.1)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGACCAGCTGTCAACC
R:
TGCCTAAGCATCACATTACCACA
Band lengths:
170-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development