DreEX6025631 @ danRer10
Exon Skipping
Gene
ENSDARG00000016163 | usp33
Description
ubiquitin specific peptidase 33 [Source:ZFIN;Acc:ZDB-GENE-040426-2323]
Coordinates
chr2:8963311-8973389:+
Coord C1 exon
chr2:8963311-8963419
Coord A exon
chr2:8969469-8969571
Coord C2 exon
chr2:8973321-8973389
Length
103 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTGTCCTTCATGTAGCTC
3' ss Score
8.95
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTATGGAGGCGGACCTGCCGTCAATCACTTGTATGTCTGCCACACCTGCCAGAATGAGATTGAGAAGCTGGAGAAACGACGCAAGAATGAACTGGACATGTTTGTTCGG
Seq A exon
CTCAATAAGGCGTTTCAGGAGGAGGAGTCTCCTGTGGTGATATACTGTATCAGCATGCAGTGGTTCCGGGAATGGGAAAGCTTTGTCAAAGGCAAGGACATTG
Seq C2 exon
ACCCACCGGGGCCAATTGATAACTCCAAGATTGCTGTAAATAAAAATGGACACATCACATTGAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016163-'25-28,'25-27,29-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.057 C2=0.625
Domain overlap (PFAM):
C1:
PF063377=DUSP=PD(11.5=35.1)
A:
PF063377=DUSP=PU(30.7=65.7)
C2:
PF063377=DUSP=FE(30.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTGCCGTCAATCACTTGT
R:
TGGCTTCAATGTGATGTGTCCA
Band lengths:
166-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]