MmuEX0050960 @ mm9
Exon Skipping
Gene
ENSMUSG00000025437 | Usp33
Description
ubiquitin specific peptidase 33 [Source:MGI Symbol;Acc:MGI:2159711]
Coordinates
chr3:152045875-152054682:+
Coord C1 exon
chr3:152045875-152045956
Coord A exon
chr3:152052705-152052807
Coord C2 exon
chr3:152054614-152054682
Length
103 bp
Sequences
Splice sites
3' ss Seq
CTGACTTTTCCTCTCTGTAGCTC
3' ss Score
10.08
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTATTCCTCCACGAAAAGCGAGTTATATTGAAGACTTAGTTTTGATGCTGCCTCAGAACATTTGGGATAACCTCTATAGCAG
Seq A exon
CTCAACAGAGCATTTCAAGAGGAGGACTCCCCAGCTACTTTTTACTGTATCAGCATGCAGTGGTTTAGAGAATGGGAGAGTTTTGTAAAGGGTAAGGATGGAG
Seq C2 exon
ATCCCCCAGGTCCAATCGACAACACTAAAATTGCGGTTACTAAATGTGGCAGTGTGATGCTCAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025437_MULTIEX2-2/2=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.057 C2=0.208
Domain overlap (PFAM):
C1:
PF063377=DUSP=FE(37.0=100)
A:
PF063377=DUSP=PU(30.7=65.7)
C2:
PF063377=DUSP=FE(30.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATTCCTCCACGAAAAGCGAGT
R:
CTTGAGCATCACACTGCCACA
Band lengths:
147-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: